Cerebrarium

Reels / Deep nuclei

How your brain says STOP: the indirect pathway

The indirect pathway, step by step: how the basal ganglia hold back the movements you don't want.

Recap: at rest the GPi inhibits the motor thalamus; the direct pathway (part 1) releases it.

The indirect pathway, step by step:

  1. The motor cortex excites the putamen (D2 neurons).
  2. The putamen inhibits the GPe.
  3. The GPe inhibits the STN less: the STN is released.
  4. The STN excites the GPi (the only excitatory nucleus in the loop).
  5. The GPi inhibits the thalamus more.
  6. The thalamus excites the motor cortex less → the movements you don't want are held back (STOP).

The route: the GPe → STN fibres cross the internal capsule in the subthalamic fasciculus; the STN → GPi fibres cross back.

Huntington's disease: the putamen neurons of the indirect pathway (the ones that inhibit the GPe) are lost first, even before symptoms. The brake gets weak → unwanted, dance-like movements (chorea). Dopamine inhibits this pathway through D2 receptors, so in Parkinson's it becomes too strong.

Sources and licence

Data: 7 T MRI of one volunteer (Lüsebrink et al., Sci Data 2021, CC0); pallidum split, STN: MASSP 2.0 (CC BY 4.0); VA/VL: Allen Human Reference Atlas 3D (CC BY 4.0); corticostriatal and thalamocortical fibres: HCP1065 tractography atlas (Yeh 2022, CC BY-SA 4.0). The striatopallidal, subthalamic and pallidothalamic fibres are drawn by us along published routes (Gallay 2008; Haber 2016). Green = excites, red = inhibits. Simplified textbook (rate) model.

Video licence: CC BY-SA 4.0. To reuse it, credit “Cerebrarium (Aldo Spolaore)”, link to this page and name the data sources above.

Educational content, not medical advice.

More on deep nuclei

All of them